... data in the target domain is available, asis the case with the GENIA Treebank (Kim et al.,2003) for biomedical papers, a parser can be re-trained to adapt to the target domain, and larger ac-curacy ... include dependency parsers (Mc-Donald and Pereira, 2006; Nivre and Nilsson, 2005;Sagae and Tsujii, 2007) and deep parsers (Kaplanet al., 2004; Clark and Curran, 2004; Miyao and Tsujii, 2008). ... Adriaans, 2006; Erkan et al., 2007; Sætre et al.,2007). PPI identification is a reasonable task forparser evaluation, because it is a typical informationextraction (IE) application, and because...