... showup in the positive map contours, whereas the partswrongly introduced into the model and absent in thetrue structure will be visible in negative contours. Inpractice, it is customary to ... parameter to check is the occupancy factor.Well-ordered atoms should have 1.00 in this column ofthe PDB file. Values equal to 0.00 mean that suchatoms are completely fictitious, without any support from ... appears to suffer from a multitude of problems (vide infra).The third main-chain conformational parameter, thepeptide torsion angle x, is expected to be close to 180°or exceptionally to 0° for...
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