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Biochemical characterization of thermophilic lignocellulose degrading enzymes and their potential for biomass bioprocessing

Báo cáo khoa học: Crystal structure of RNase A tandem enzymes and their interaction with the cytosolic ribonuclease inhibitor potx

Báo cáo khoa học: Crystal structure of RNase A tandem enzymes and their interaction with the cytosolic ribonuclease inhibitor potx

... structure of RNase A tandem enzymes and their interaction with the cytosolic ribonuclease inhibitorUlrich Arnold, Franziska Leich*, Piotr Neumann, Hauke Lilie and Renate Ulbrich-HofmannDepartment of ... crystal structures of three tandem enzymes withthe linker sequences GPPG, SGSGSG, and SGRSGRSG, which allowed usto analyze the mode of binding of RI to the RNase A tandem enzymes. Modeling studies ... catalytically active and that theactivity decrease [16] is a result of the tandemization.Accessibility of the linker of SGRSGRSG-RATE inthe presence of RIThe accessibility of the linker sequence...
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Báo cáo khoa học: Glycolysis in Entamoeba histolytica Biochemical characterization of recombinant glycolytic enzymes and flux control analysis ppt

Báo cáo khoa học: Glycolysis in Entamoeba histolytica Biochemical characterization of recombinant glycolytic enzymes and flux control analysis ppt

... with ahigher concentration of PGAM than of PPDK atpH 6. The control analysis showed CJEivalues of 0.08 and 0.2 for PGAM and 0.85 and 0.57 for PPDK at 10 and 39 mU of added PPDK, respectively. ... instead of PPi-PFK and PYK instead of PPDK). At pH 6.0,the Vmaxvalues of amoebal PGAM and PPDKshowed a slight increase, those of HK, HPI, TPI and ENO were relatively unchanged, and those of PPi-PFK, ... at which amoebas grow in vitro and in the host, and at optimal pH and at pH values of 6.0 and 7.0.The Vmaxvalues of the His-tagged recombinant enzymes in the forward (glycolytic) direction...
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Tài liệu Báo cáo khoa học: Tissue expression and biochemical characterization of human 2-amino 3-carboxymuconate 6-semialdehyde decarboxylase, a key enzyme in tryptophan catabolism pptx

Tài liệu Báo cáo khoa học: Tissue expression and biochemical characterization of human 2-amino 3-carboxymuconate 6-semialdehyde decarboxylase, a key enzyme in tryptophan catabolism pptx

... software swiss-pdbviewer and visual molecular dynamics [49].AcknowledgementsWe thank G. Magni and S. Ruggieri for helpful com-ments and suggestions and T. Begley (Department of Chemistry and ... inmedia containing isoform I. Both isoforms werealso expressed intracellularly, as evidenced by theappearance of protein bands of the expected sizeupon SDS ⁄ PAGE analysis of the crude extractsprepared ... amplification and cloning of ACMSDisoformsHuman brain, liver and kidney total RNA (ClontechLaboratories, Inc., Mountain View, CA, USA) was reversetranscribed in the presence of random primers,...
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Tài liệu Báo cáo khoa học: Structural and biochemical characterization of a human adenovirus 2/12 penton base chimera pptx

Tài liệu Báo cáo khoa học: Structural and biochemical characterization of a human adenovirus 2/12 penton base chimera pptx

... jellyroll domain formed by two b-sheets and a distal domain formed by insertions between thestrands of the jellyroll domain (Fig. 3). Antiparallelb-sheets made up of strands CHEF and BIDG packagainst ... ionicstrength of the solvent environment and ⁄ or presence of small organic compounds (dioxane and MPD)seems to favor formation of dodecahedra over isolatedpentamers. Previous structural analysis of the ... A˚) of dodecahedral penton and penton baseparticles formed by the hAd3 serotype revealed addi-tional density in the region of the hypervariable loop,implying some favored conformations of the...
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Tài liệu Báo cáo khoa học: Biochemical characterization of human 3-methylglutaconyl-CoA hydratase and its role in leucine metabolism docx

Tài liệu Báo cáo khoa học: Biochemical characterization of human 3-methylglutaconyl-CoA hydratase and its role in leucine metabolism docx

... crotonyl-CoA,3-hydroxybutyryl-CoA and 3-methylcrotonyl-CoAwere used for the kinetic characterization of AUH.The data are summarized in Table 2.Overexpression of a mutant form of AUH and its activity on (E)-3-MG-1-CoAMutations ... proceduresProduction and purification of human AUHin E. coliThe production of AUHp40 (precursor form), AUHp32(mature form), AUHp40A240 V and AUHp32A240 V inE. coli was performed using the pMAL-c2 ... shoulder and the tailing is due to acetyl-CoA and not due toany other compound. (B) The peaks 3, 4, and 5 were isolated by HPLC and used as substrates for AUH. The AUH assay contained 2 mM of the...
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Tài liệu Báo cáo khoa học: Biochemical characterization of Bacillus subtilis type II isopentenyl diphosphate isomerase, and phylogenetic distribution of isoprenoid biosynthesis pathways doc

Tài liệu Báo cáo khoa học: Biochemical characterization of Bacillus subtilis type II isopentenyl diphosphate isomerase, and phylogenetic distribution of isoprenoid biosynthesis pathways doc

... large number of orthologs(Figs 2,9). This suggests an essential role for FMN despitethe low affinity of the enzyme for that cofactor and theapparent absence of a redox process as part of the catalyticcycle. ... homooctamerstructure with a relative mass of 309 kDa [29]. In order tocheck for the potential influence of substrates and cofactorson the quaternary structure of the enzyme, we performedboundary sedimentation ... exception of Mycoplasma gallisepticum R, Myco-plasma penetrans and Spiroplasma kunkelii, the genomes of the members of the mollicutes group (total number, 7 out of 10) are devoid of genes for the...
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Tài liệu Báo cáo Y học: Structural and biochemical characterization of neuronal calretinin domain I– II (residues 1– 100) Comparison to homologous calbindin D28k domain I–II (residues 1 –93) pdf

Tài liệu Báo cáo Y học: Structural and biochemical characterization of neuronal calretinin domain I– II (residues 1– 100) Comparison to homologous calbindin D28k domain I–II (residues 1 –93) pdf

... calcium-binding loops of EF-hand proteins, have chemical shifts . 10 p.p.m. for filled loops and chemical shifts of < 8 p.p.m. for emptyloops [50]. The chemical shifts of CR I–II, Calb I – II and several ... University of Debrecen, Hungary;3Department of Inorganic Chemistry, and 4Research Group for Antibiotics, Department of Chemistry, University of Debrecen, Hungary;5International Institute of Molecular ... 2001)Abbreviations: CR, calretinin (rat isoform, unless otherwise stated); CRI–II, calretinin residues 1–100 consisting of the first pair of EF-handmotifs; Calb, calbindin D28k(rat isoform, unless otherwise...
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Báo cáo khoa học: Biochemical characterization of USP7 reveals post-translational modification sites and structural requirements for substrate processing and subcellular localization pptx

Báo cáo khoa học: Biochemical characterization of USP7 reveals post-translational modification sites and structural requirements for substrate processing and subcellular localization pptx

... process-ing of ubiquitin and ubiquitin-like proteins. They areresponsible for the disassembly of ubiquitin chains, and for the cleavage of mono- and oligomers of this mole-cule, either in precursor form ... Coomassie stained and major bands were excised and eluted in order to perform N-terminal sequencing.Tandem affinity purification and massspectrometric analysis of USP7N-terminal and C-terminal ... Institutes for Biomedical Research, Basel, Switzerland4 Biologics Centre, Novartis Institutes for Biomedical Research, Basel, SwitzerlandDeubiquitinating enzymes (DUBs) are a superfamily of thiol- and...
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Báo cáo khoa học: Molecular cloning and characterization of methylenedioxy bridge-forming enzymes involved in stylopine biosynthesis in Eschscholzia californica doc

Báo cáo khoa học: Molecular cloning and characterization of methylenedioxy bridge-forming enzymes involved in stylopine biosynthesis in Eschscholzia californica doc

... structures of isoquinolinealkaloids, because the structures of many P450s areclosely correlated with those of their substrates. Fur-ther identification and characterization of other mem-bers of the ... (R,S)-tetrahydroberberine.Amplification of cytochrome P450 cDNAfragments from single-stranded cDNAs of cultured E. californica cellsSingle-stranded cDNAs were synthesized from 1.4 lgoftotal RNA of 12-day-old cultured E. californica ... parameters of CYP719A3, the amount of nandinine produced was estima-ted by using the calibration curve of (S)-scoulerine (pmolversus peak area) and the absorption ratio of (S)-scoulerine and (S)-nandinine...
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