... Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick ... displacement(AAPD), defined as the average offset of overlappingsense and antisense products at a given locus. Indeed, allthe known Ciona miRs have AAPD scores of 0, while ran-dom sampling of ... thisanalysis are summarized in Table S1 in Additional file 1.The software for miRTRAP and other resources are avail-able on our website [49].Additional materialAbbreviationsAAPD: average antisense...