... stochastic approach to the identification of the protein specificity determinants and functional subfamiliesPavel V Mazin1, Mikhail S Gelfand1,3, Andrey A Mironov1,3, Aleksandra B Rakhmaninova1,3, ... belong-ing to the gold standard positive set and predicted aspositives), FP is the number of false positives, TN is the number of true negatives and FN is the number of falsenegatives. To evaluate the ... set of specificity groups and identify SDPs using the SDPlight procedure. Then weconsider each sequence of the MSA as a sequence of unknown specificity, and use SDPprofile to reassign it to one...