... the
corresponding orientation of the side chain
of Glu221. The second conformation of the
side chain of Glu221, which also adopts two
conformations but not correlated with the
anomeric form of ... Authors Journal compilation ª 2006 FEBS
Structural basis for the recognition of complex-type
biantennary oligosaccharides by Pterocarpus angolensis
lecti...
... results from conformational
control of the enzyme on the side chain rotamer of the
bound substrate. For example, in AsnO, a trans con-
former is selected for the v
1
torsion angle of bound
l-asparagine, ... in
active site formation by bordering the substrate bound
therein.
Active site of VioC
Crystals of the substrate complex were obtained by
crystallization of...
... peptide:protein
ratios of 0.5 and 1, corresponding to the free and
bound forms, respectively. Their intensities vary
according to the population fractions of the free and
bound forms of DYNLL1 at the various ... area.
Figure 4A shows the 20 lowest-energy conformers
from the selected cluster modelled using the Haddock
docking calculations. The rmsd values for the 20
l...
... comparing the phosphorylation of the
natural substrates of the double mutant with the single
mutant, it seems that the mutation N45D in the
double mutant counteracts the negative effect(s) of the
N64D ... ion in the P-loop and
Glu172 to the 3¢-OH of the substrate. In the dTTP
complex, the phosphates are bound by the LID argi-
nines and the 3¢-OH is boun...
... half-buried, and the form of the cleft is markedly
different from those of TvuCMBP and EcoMBP.
These observations suggest that the structure of the
N-domain part and the capacity of the sugar-binding
site ... complex,
the specificity of the bacterial sugar-binding proteins
should be defined in terms not of the affinities for
sugars but of whether the protein a...
... chain
takes place at the second glycosidic linkage from the
MeGlcA side group towards the reducing end of the
xylan chain. The elucidation of the three-dimensional
structure of the E. chrysanthemi GH30 ... char-
acter of the substrate, this Xyl becomes the product of
hydrolysis or the nonreducing end of the leaving
group. A stereo view of the mode of bi...
... hybridize to the 5¢-end
of the loops and propagate to nucleotides involved in
the formation of the helix. The strong preference for
the 5 ¢-side of the loops in comparison with the 3 ¢ -side
may ... Participation of
the N7 atom of purines in the organization of the ter-
tiary structure of other RNAs has been extensively
investigated by the NAIM method...
... reduced by
the s tacking of O d1 in between the plane of the thiourea
moiety and the Ca of G190.
Hence, the undefined orientation of the N103 amide Od1
and Nd2 atoms may r eflect the repulsive forces ... electron density for the a mide part
of the residue is not very well defined for any of the inhibitor
complexes, the inhibitors can still be clearly ranke...
... binding of
coenzyme and substrate to the enzyme in its open con-
formation followed by the closure of the interdomain
cleft. In FDH, the structural ordering of the C-ter-
minal helix and the rotation ... exit by a reopening of
the interdomain cleft.
In addition to explaining the functionality of the
catalytic triad, the structure–function relationships
obta...
... demonstrated the transport
of conjugated and unconjugated lipophilic anions by
MRP2. The absence of MRP2 from the canalicular
membrane of human hepatocytes is the molecular basis of
the Dubin–Johnson ... N-terminus of MRP2.
The N -terminus of MRP2 is located on the extracellular s ide
[16], therefore a cDNA was constructed which led to
translation of a GFP inse...