... theperformance of rosetta using multiple sequence align-ment information and global measures of hydrophobiccore formation. Proteins 43, 1–11.11 Murata T, Fushinobu S, Nakajima M, Asami O, SassaT, ... ligandTakashi Murata1,3, Hikaru Hemmi1, Shugo Nakamura2, Kentaro Shimizu2, Yoshihito Suzuki3andIsomaro Yamaguchi31 National Food Research Institute, Kannondai, Tsukuba, Japan2 Department ... nodistance and dihedral angle violations greater than0.5 A ˚and 5 A ˚, respectively, were obtained. Statisticaldata for the 50 structures of the major conformer ofpeptide SD are given in Table...