... A,
CB
a1
is the same atom in the N-terminal cysteine residue
in cystine B, CA
a2
is the C-terminal cysteine residue in
cystine A and CB
a2
is the C-terminal cysteine residue in
cystine B. A distance ... components of snake venoms
forming so-called three-fingered protein domains (TFPDs) are similar to
those of the ectodomains of activin, bone morphogenetic protein and trans-
formi...
... hypotheses. As δ increases, we penal-
ize long dependenciesless. We call this structural
annealing, since we are varying the strength of a
soft constraint (bias) on structural hypotheses. In
structural ... of
picking the right point on the curve to stop. See Table 3 for
performance of models selected across smoothing, initializa-
tion, starting, and stopping choices, in all six lang...
... membrane-bound
translocation machinery that includes the protein Albino3
[5–9]. The Alb3 protein is related to the Oxa1p and YidC
proteins that play important roles in the insertion of
proteins into the bacterial ... spontaneous insertion mechan-
ism involve binding of the intermediate-size protein to the
membrane, after which both hydrophobic domains (one in
the signal peptide, t...
... difficult to find
characters that are written in similar ways, e.g.,
“構” with “購”, in an efficient way. It is intriguing
to resort to image processing methods to find such
structurally similar ... characters in the
right group in the second row in Figure 3 appears
in different places in the characters.
Lexicographers employ radicals of Chinese
characters to organize Chi...
... Sentence
Relation Labeling.
In a thread containing N sentences, we would
have a 2D CRF containing N
2
nodes in a N × N
grid. Exact inference in such a graph is intractable.
In this paper we use ... general
CRFs. In linear-chain CRF, cliques only involve two
adjacent variables in the sequence. Figure 3 shows
the graphical structure of a linear-chain CRF. In our
case of sentence t...
... outperforming them as
we first hypothesized. And finally, we see again that
while in most cases combining speech and lexical
features yields better performance than using only
speech features, the combined ... human
tutoring data, as a step towards understand the dif-
ferences between annotating and predicting emotion
in human versus computer tutoring dialogues.
With respect to inter-annota...
... unitary
digraphs in other languages so these can be used
when needed in information processing. (Informa-
tion processing is not the shuffling of bits of
scribal ink:) The principle does not ... assignments.
Information vs. Form. In developing proposals
for codes in information processing, the most impor-
tant decisions are the choices of what to code. In
a proposal for a mu...
... addressing a single individual. When
addressing an individual, people gaze 1.6 times
more while listening (62%) than while speaking
(40%). When addressing a triad the amount of
speaker gaze increases ... related to meeting
research that could benefit from studying address-
ing in human-human interactions. The results
can be used by those who develop communicative
agents in interactive inte...
... Bauer F, Friedrich U,
Kardinal C, Feller SM, Biesinger B & Sticht H (2002)
Structural investigation of the binding of a herpesviral
protein to the SH3 domain of tyrosine kinase Lck.
Biochemistry ... trifluoroethanol; VpU, virus protein U; VpUcyt, C-terminal,
cytoplasmic domain of VpU (residues 39–81) plus N-terminal Gly-Ser dipeptide; b-TrCP, b-transducin repeat-containing protein;...
... subdomains within the linker histone H1
0
C-terminal domain. J Biol Chem 279, 8701–8707.
48 Schlessinger A & Rost B (2005) Protein flexibility and
rigidity predicted from sequence. Proteins ... compared with the
wild-type protein indicates that the structure of the
N-terminal domain is maintained, at least in the
vicinity of the tryptophan residues. The increase in
exposed clustere...