the influence of the type of flow on reactor performance
PREDICTIVE TOXICOLOGY - CHAPTER 3 pps
... GC effect, reflects the expression of a gene solely depending on the tested condition (i.e., the conditionspecific expression or the effect of interest) Of the other © 2005 by Taylor & Francis ... experiment the measurement of the expression of the test condition and reference condition is paired (measurement of both expression levels on a single spot), the paired variant of the statistical test ... design, one is not interested in knowing whether the expression of a gene in the test condition is significantly different from its expression in the reference condition since the reference condition...
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Báo cáo y học: "Computational Biology and Bioinformatics" doc
... transposons in the WGS trace reads of G raimondii, suggesting that a complete genome of cotton will help elucidate the functions of these siRNAs and other small RNAs, including miRNAs, during cotton ... Length (number of nucleotides) Figure Sequencing flow chart and size distribution of small RNAs in cotton Sequencing flow chart and size distribution of small RNAs in cotton (a) Flow chat of small ... retrotransposons of G raimondii origin in tetraploid cotton Identification of miRNAs in cotton We adopted the common criteria [34] to identify known miRNAs and/or precursors in cotton First, a cotton miRNA...
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Computational Biology and Applied Bioinformatics
... parsimony The Maximum parsimony (MP) method is based on the simple principle of searching the tree or collection of trees that minimizes the number of evolutionary changes in the form of change of ... to the primary amino acid sequence, these motifs are on the C-terminal side of the Walker B motif The Sensor motif contains a polar amino acid at the end of the β4 strand On the basis of the ... comparison of the nucleotide sequence with the genomic DNA sequence can identify the site of the disrupted gene, or the site of insertion of the transposon Fig DNA recombination between the chromosomal...
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Computational Intelligence and Pattern Analysis in Biology Informatics potx
... In other applications, the changes of the activation values of the output neurons are significant, such that the dynamical behavior constitutes the output of the network There are several other ... level of the neuron), and a set of output connections (representing a neuron’s axonal projections) Each of these aspects of the unit is represented mathematically by real numbers Thus each connection ... linear threshold unit The behavior of the neural network depends largely on the interaction between the different neurons The basic architecture consists of three types of neuron layers: input, hidden...
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algebraic statistics for computational biology - lior pachter and bernd sturmfels
... corresponding only to leaves of the tree The state space of the hidden tree model is Σ1 ×Σ2 ×· · ·×Σn , the product of the alphabets associated with the leaves of T The cardinality of the state ... negative, and we conclude that ℓ(θ) is strictly concave for all θ ∈ Θ The critical points of the likelihood function ℓ(θ) of the linear model f are the solutions to the system of d equations in d unknowns ... = Au The intersection of the polytope PA (b) with the toric model f (Rd ) consists of precisely one >0 point That point is the maximum likelihood estimate p for the data u Proof Consider the entropy...
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SYSTEMS AND COMPUTATIONAL BIOLOGY – BIOINFORMATICS AND COMPUTATIONAL MODELING ppt
... selection of proteins according to their function and of the amplification of their corresponding nucleic acids which are linked to the proteins Iteration of the cycles diminishes the background of ... limited to the sum of the sequences of the proteins present Knowledge of the proteome requires knowledge of the structure of the proteins in the proteome and the functional interaction between the proteins ... fundamental as the physics of MS relies upon the molecule of interest being charged, resulting in the formation of positive ions, and, depending on the ionization method, fragment ions These ion species...
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Báo cáo y học: " Bioinformatics and Computational Biology, University of North Carolin" ppsx
... [2,3]; one of these two subtypes is defined by the high expression of HER2/ERBB2/NEU (HER2+/ER-) and the other shows characteristics of basal/myoepithelial cells (basal-like) The third major subtype ... transformation for these heterogeneous models, the study of progression or therapeutic response will best be accomplished by first sub-setting by subtype, and then focusing on biological phenotypes There ... (Additional data file 2) Taken together, these data suggest that the human 'luminal' profile may actually be a combination of at least two profiles, one of which is ER-regulated and another of which...
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Báo cáo y học: "Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health" pptx
... represent the ends of fragments in a ChIPDNA library and are often shifted towards the 3' direction to better represent the precise protein-DNA interaction site The size of the shift is, however, often ... if the Watson tag center is to the left of the Crick tag center The distance between the modes of the Watson and Crick peaks in the alignment is defined as 'd', and MACS shifts all the tags by ... Number of control peaks / Number of ChIP peaks MACS can also be applied to differential binding between two conditions by treating one of the samples as the control Since peaks from either sample...
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Post-Harvest Biology and Technology of Citrus Fruits
... Skin Abrasions Detection of Wounds on Lemons Oil Spotting on Lemons Oil Spotting on Limes Preharvest Factors Affecting Susceptibility to Oil Spotting Chilling Injury Symptoms on Lemons From: Jim ... Measuring Soluble Solids Content of Orange Juice Relationship Between Sugar/Acid Ratio And Panelist’s Response To The Question About Willingness To Buy Navel Oranges Number of responses Sampling % samples ... accelerates chlorophyll degradation 20-25°C 20- 25° 1-2 air changes/hr Duration of degreening required depends on maturity stage (amount of chlorophyll) in the skin of citrus fruits Washing -Dumping-...
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Tài liệu Computational Biology & Bioinformatics: A Gentle Overview ppt
... moment One of them is making your hair strong, another giving the glitter in your eyes, another one carrying oxygen to different parts, and yet another one helping in the making of proteins themselves ... India, they would call it the studentome They may raise their voice against the corruptome that is prevalent in the Government ! Beware of meeting more omes soon) Genes are specific regions of the ... Proteins, is the Central Dogma of Molecular Biology Imagine, there are trillions of cells in your body, the DNA of each of them is churning out thousands of RNAs which in turn cause thousands of proteins...
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Tài liệu Measuring Immunity: Basic Biology and Clinical Assessment doc
... in the response Now, 50 years after the discovery of the structure of DNA and in the year of the completion of the sequencing of the human genome, we are poised to begin to truly understand the ... established that the Ir gene products were responsible for the variations in responsiveness to synthetic peptides and eventually came to the conclusion that they were one and the same as the Ia or MHCII ... clinical efficacy of the therapy, not provide insights in the immune manifestations of therapy Is the immune system activated by the therapy, is the tumor resistant to the therapy or does it...
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Tài liệu Báo cáo khoa học: Computational processing and error reduction strategies for standardized quantitative data in biological networks doc
... the use of a calibrator not only permits quantitative data generation, but also conversion of relative values to absolute protein concentrations The addition of the calibrator had no effect on ... depicts the linear relationship between the calibrator concentration added to the lysate and the detected signal within a range of 2.5–100 ng of calibrator addition The blue line depicting the average ... camera-based detection We fused the protein domain containing the epitope of the antibody used for IP to a affinity tag for purification (Fig 4A) Using only part of the protein, calibrators of large proteins...
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Optical Interferometry for Biology and Medicine docx
... numbers of photons, the fluctuation in the arrival of the photons is DN ¼ pffiffiffiffi N (1.28) where N is the mean number of detected photons in some integration time, and DN is the standard deviation in the ... relative to the number of incident photons), hn is the photon energy, P is the power captured on the detector area, and BW is the detection bandwidth (often identified as the inverse of the detector ... property of a resonator cavity is the multiple-pass of a photon through the cavity prior to being lost by transmission through one of the mirrors or by photon extinction (scattering or absorption) The...
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Computational Complexity and Information Asymmetry in Financial Products pptx
... probability The above discussion allows us to quantify precisely the effect of an (m, n, d)-subgraph on the lemon cost Let p ∼ Φ(−b/2σ) be the probability of default The mere addition of n lemons (regard√ ... technical level the relation of our constructions to commonly used types of derivatives Role of random graph Real-life constructions not use a random graph Rather, seller tries to put together a diversified ... could “position” the junk assets among the N assets while designing the derivative (We’ll often drop the subscripts F, X when they are clear from context.) The lemon cost captures the inefficiency...
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Báo cáo khoa học: "COMPUTATIONAL PLEXITY AND LEXICAL FUNCTIONAL GRAMMAR" docx
... conjunction of disjunctions A formula is satisfiable just in case there exkts some assignment of T's and ['~s (or t's and 0's) to the Iiterals of the formula X i that fumes the evahmtion of the ... passed up, then since the LFG machinery automatically mergea the values of any features with the same name at the topmost node of the paine tree, the LFG machinery would fume the union of the feature ... just like the copying of the Subject Features of a Verb Complcmcnt into the Object position of a matrix clause reason, the stock of lexicalitems or featurelabelsis finite, then the reduction method...
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Cell biology and plamid
... within the mitochondrion the matrix and the intermembrane space 22 Mitochondria • The site of oxygen consumption within cells • Have their own DNA that is similar to prokaryotic DNA • Have their ... flatten sacs called _ concentrates and packages proteins synthesized on the ER The Golgi is functionally associated with the ER 18 Proteins synthesized on the ER are concentrated internally and ... The interior contents of cells is the cytoplasm The cytoplasm is isolated from the surrounding environment by the There are two fundamentally different forms of cells ...
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Biotechnology of Microbial Xylanases: Enzymology, Molecular Biology and Application
... studies on cloning of xylanase gene include the works on Bacillus spp.6 In addition to permitting the introduction of novel genes, cloning techniques could enable amplification of the expression of ... 33-46 hydrolyse their substrates with the retention of the C1 anomeric configuration There is the involvement of double displacement mechanism for the anomeric retention of product.111 The double ... transglycosylation reactions C) Water displaces the nucleophile D) Dissociation and diffusion of the glycone (xylobiose) allow movement of the enzyme to a new position on the substrate Xylanases of family...
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Papaya biology and biotechnology
... given the potential disadvantages of cross protection such as the adverse effects of the protectant strain on the host, dissemination to other crops, and the probability of revertants (Yeh and Gonsalves ... from other genera in the Caricaceae even though the resistance appears to be variable and dependent on the geographic origin of the virus and environmental conditions (Gonsalves et al 2005) In the ... subfractions of the benzene chromatographic fraction of the chloroform extract of the seeds of C papaya, respectively; Lohiya et al 2005, 2006; N K Lohiya pers comm.) demonstrated that the methanol...
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Nanotechnology for Biology and Medicine docx
... coating, and the uncured portions are removed by the developer (Fig 2c) This step is then followed by the etching of the substrate and the final removing of the photoresist (Fig 2d) The type of resist ... the collagen subtypes Second, fibronectin, the next largest quantity of proteins found in the ECM, is one of the glycoproteins involved in cell adhesion to the ECM and cell migration It exists as ... facilitate their migration across the open wound bed in response to chemoattractants The migration of epithelial cells occurs independently of proliferation and depends upon a number of factors,...
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HERONS, EGRETS AND BITTERNS Their biology and conservation in Australia docx
... Like other birds herons walk on the flat of their toes with the rest of the foot raised off the ground The long toes distribute the heron’s weight when walking on mud or floating vegetation Bitterns ... Night Heron were not sighted for the new atlas Breeding distribution During the breeding season there is a massive contraction in the ranges of colonial heron species as they converge onto the traditional ... binocular vision at the front The second property, not unique to herons, is its ‘bifocal vision’ whereby the lower part of the visual field can be focused on the ground in front of its feet when the upper...
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