rapa genome sequencing project

Báo cáo y học: "n Ambystoma mexicanum EST sequencing project: analysis of 17,352 expressed sequence tags from embryonic and regenerating blastema cDNA libraries" pot

Ngày tải lên : 14/08/2014, 14:21

... assembling large shotgun sequencing projects Genome Sci Technol 1995, 1:9-19 Voss SR, Parichy DM: Salamander Genome Project Axolotl Newslett 2001, 29 Salamander Genome Project [http://salamander.uky.edu] ... tropicalis genome databases, and the EST databases for X laevis, X tropicalis, zebrafish, A mexicanum and A tigrinum Genome Biology 2004, 5:R67 http://genomebiology.com/2004/5/9/R67 Genome Biology ... This category included regulation of mitosis, mitosis, Genome Biology 2004, 5:R67 http://genomebiology.com/2004/5/9/R67 Genome Biology 2004, Genome Biology 2004, 5:R67 information In contrast, we...

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Báo cáo y học: "Analysis of genetic systems using experimental evolution and whole-genome sequencing" docx

Ngày tải lên : 14/08/2014, 17:22

... their spartan genomes, RNA and DNA viruses were the first organisms for which individual genomes from replicate laboratory populations were fully sequenced Although whole -genome sequencing reveals ... selection Whole -genome sequencing of MA lines offers considerable promise for seeing the types of mutations that arise in such selection-less experiments This Genome Biology 2007, 8:201 201.4 Genome Biology ... Studying the basis of clonal interference by whole -genome sequencing Herring et al [8] sequenced clonal samples from their populations after 44 days Sequencing of many clones from each population...

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Báo cáo y học: "Whole genome sequencing of a natural recombinant Toxoplasma gondii strain reveals chromosome sorting and local allelic variants" ppsx

Ngày tải lên : 14/08/2014, 21:20

... Targeted sequencing Sanger sequencing confirmed SNPs discovered by the 454 sequencing of TgCkUg2, and was used to investigate the Genome Biology 2009, 10:R53 http://genomebiology.com/2009/10/5/R53 Genome ... distri- Genome Biology 2009, 10:R53 http://genomebiology.com/2009/10/5/R53 Genome Biology 2009, Volume 10, Issue 5, Article R53 Bontell et al R53.3 Table Summary of 454 whole genome sequencing ... whole genome sequencing of this isolate, TgCkUg2, a recombinant between type II and III Alignment with the reference genomes for Me49 (type II) and VEG (type III), revealed which parts of the genome...

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Báo cáo y học: "Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery" potx

Ngày tải lên : 14/08/2014, 21:21

... 25(Suppl 1):19-27 Ensembl Genome Browser [http://www.ensembl.org] UCSC Genome Browser [http:/ /genome. ucsc.edu] Baylor College Bovine Genome Project [http:// www.hgsc.bcm.tmc.edu/projects/bovine] Baylor ... Discussion Sequencing and alignment The genomic DNA sequenced in this study was obtained from a single blood sample of a Fleckvieh breeding bull Wholegenome sequencing was performed on an Illumina Genome ... especially with sequencing outputs from a single experiment predicted to cross the 100 Gb threshold before the end of 2009 Genome Biology 2009, 10:R82 http://genomebiology.com/2009/10/8/R82 Genome Biology...

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Báo cáo khoa học: "The GENIA project: corpus-based knowledge acquisition and information extraction from genome research papers" docx

Ngày tải lên : 17/03/2014, 23:20

... thesaurus for the genome domain but this currently depends on the creation of a suitable test set 1.4 Conclusion This paper has provided a synopsis of the GENIA project The project will run for ... Proceedings of EACL '99 and DNA entities was too small to train with As part of the overall project we are creating an expert-tagged corpus of MEDLINE abstracts and full papers for training ... years and aims to provide an online demonstration of how language engineering can be useful in the genome domain References L.D Baker and A.K McCallum 1998 Distributional clustering of words for...

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Báo cáo khoa học: Genome-wide identiﬁcation of glucosinolate synthesis genes in Brassica rapa potx

Ngày tải lên : 29/03/2014, 23:20

... engineering In the present study, we report the genome- wide identification of B rapa glucosinolate synthesis (BrGS) and regulator genes using our B rapa genome sequence in conjunction with the available ... identification from cDNA and bacterial artificial chromosome (BAC) libraries As part of the B rapa genome sequencing project, we produced 127 143 expressed sequence tags (ESTs) from 28 different cDNA libraries ... exist in B rapa BrGS gene duplication The Brassica genome is believed to have triplicated soon after its divergence from Arabidopsis [65–67] The 3568 Y.-X Zang et al genome sizes of B rapa (550...

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Minireview Maize DNA-sequencing strategies and genome organization Ron J Okagaki and Ronald L ppt

Ngày tải lên : 09/08/2014, 20:20

... the genome, and it seems possible that genes encoding microRNAs and small polypeptides will be captured by one or other technique The application of genome filtration for sequencing the maize genome ... genome organization must be considered before applying genome- filtration techniques to other organisms If funding becomes available, there are strong reasons for sequencing the entire maize genome ... provides a much broader foundation for exploring the complete genome Genome Biology 2004, 5:223 http://genomebiology.com/2004/5/5/223 Genome Biology 2004, Volume 5, Issue 5, Article 223 Okagaki...

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Báo cáo y học: " Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplicatio" potx

Ngày tải lên : 09/08/2014, 20:20

... in the Br genome hinder direct application of whole genome shotgun sequencing Instead, targeted sequencing of specific regions of the Br genome could be informed by the reference At genome by ... [74] tions Further genome sequencing will help resolve the synteny in the uncovered and/or the scattered genome regions Rearrangement of the B rapa genome Comparison of the genomes of Br and At ... across the tribe Brassiceae Genome Res 2005, 15:516-525 Brassica Genome Gateway [http://brassica.bbsrc.ac.uk] The Korea Brassica rapa Genome Project [http:// www.brassica -rapa. org/BRGP/index.jsp]...

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Báo cáo y học: "eening the human exome: a comparison of whole genome and whole transcriptome sequencing" pot

Ngày tải lên : 09/08/2014, 20:22

... using the Illumina Genome Analyzer II Sequencing of the gDNA produced 1,450 million reads, each 75 bp long Ninety percent of these reads were aligned to the human reference genome by BWA [4], ... coverage of at least 5× for 94% of the bases in the genome (gaps in reference genome excluded), and the mean coverage for these bases was 24× Sequencing of the cDNA produced 280 million reads, ... 33 Cirulli et al Genome Biology 2010, 11:R57 http://genomebiology.com/2010/11/5/R57 Alignment and single nucleotide variant identification gDNA was aligned to the reference genome (NCBI build...

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Báo cáo y học: "Sequencing and analysis of an Irish human genome" ppt

Ngày tải lên : 09/08/2014, 22:23

... comprehensive haplotype information likely to emerge from other re -sequencing projects and the 1000 Genomes project, our data suggest that sequencing at relatively low levels should provide relatively ... Sheridan A, Sougnez C, et al: Initial sequencing and analysis of the human genome Nature 2001, 409:860-921 Genome. gov | ENCODE and modENCODE Projects [http://www .genome gov/10005107] Park PJ: ChIP-seq: ... standard clustering and sequencing protocols - for extended runs multiple sequencing kits were pooled Read mapping NCBI build 36.1 of the human genome was downloaded from the UCSC genome website and...

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Báo cáo y học: " Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis" doc

Ngày tải lên : 09/08/2014, 22:24

... schema varied in their Ashelford et al Genome Biology 2011, 12:R28 http://genomebiology.com/content/12/3/R28 Page of 12 For each genome (Ebi-1, Ws-2): 1.1 Prepare genome DNA sample 1.2 Generation of ... Therefore, in parallel to the mapping, we sequenced the genomes of Ws-2 and ebi-1 in an attempt to identify candidate polymorphisms Sequencing the genomes of WS-2 and ebi-1 The ebi-1 mutant was backcrossed ... al Genome Biology 2011, 12:R28 http://genomebiology.com/content/12/3/R28 the number of point mutations must be considered One such method [16,17] has combined bulk segregation analysis with genome...

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Báo cáo y học: "Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes" ppsx

Ngày tải lên : 09/08/2014, 23:20

... community with updated information on targeting of species for genome sequencing Python genome project overview A main goal of the python genome project is to provide key genomic resources to facilitate ... confirmed genome projects, there are two other major groups, blindsnakes and venomous vipers (for example, rattlesnakes), that are not yet explicitly targeted by ongoing genome sequencing projects ... [http://www.genomex.com/] Castoe et al Genome Biology 2011, 12:406 http://genomebiology.com/2011/12/7/406 31 32 33 34 Ensembl [http://www.ensembl.org] UCSC genome browser [http:/ /genome. ucsc.edu]...

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Báo cáo y học: "Bench-to-bedside review: Fulfilling promises of the Human Genome Project" pot

Ngày tải lên : 12/08/2014, 18:21

... Patrinos A, Morgan MJ, Szustakowki J; International Human Genome Sequencing Consortium: Initial sequencing and analysis of the human genome Nature 2001, 409:860-921 Venter JC, Adams MD, Myers ... study Hence, a subset of SNPs spaced throughout the genome might allow a comprehensive test of common genetic variation across the entire genome Although the specific number of SNPs needed for ... the expectation of preventive strategies and therapeutic solutions As the first round of human genome sequencing nears completion, identifying functions for each of the 30,000 or more human genes,...

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Báo cáo y học: "Lessons learned from the initial sequencing of the pig genome: comparative analysis of an 8 Mb region of pig chromosome 17" ppsx

Ngày tải lên : 14/08/2014, 08:20

... pipeline reviews Swine Genome Sequencing Consortium [http://www.pigge nome.org/index.php] Wellcome Trust Sanger Institute Swine Genome Sequencing and Mapping [http://www.sanger.ac.uk/Projects/S_scrofa/] ... relationships between loci across species Genome Biology 2007, 8:R168 http://genomebiology.com/2007/8/8/R168 Genome Biology 2007, refereed research interactions information Genome Biology 2007, 8:R168 deposited ... less than in 100,000 bases However, the international pig genome sequencing project currently has funding to generate in the first phase of sequencing only draft sequence at 3-4× coverage overall...

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Báo cáo y học: "Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome" pptx

Ngày tải lên : 14/08/2014, 08:20

... to the novel TARs The Genome Biology 2008, 9:R3 http://genomebiology.com/2008/9/1/R3 Genome Biology 2008, Volume 9, Issue 1, Article R3 Wu et al R3.3 Table Summary of RACE sequencing using polyA+ ... legend on next page) Genome Biology 2008, 9:R3 http://genomebiology.com/2008/9/1/R3 Genome Biology 2008, Volume 9, Issue 1, Article R3 Wu et al R3.7 Figure (see previous page) RACE sequencing can detect ... 5'-AAGCAGTGGTATCAACGCAGAGT3') The primers were mapped against the genome to ensure Genome Biology 2008, 9:R3 http://genomebiology.com/2008/9/1/R3 Genome Biology 2008, Volume 9, Issue 1, Article R3 Wu et...

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Báo cáo y học: "A fruitful outcome to the papaya genome project" ppt

Ngày tải lên : 14/08/2014, 08:21

... starch metabolism and the development of volatiles Genome Biology 2008, 9:227 Genome Biology 2008, http://genomebiology.com/2008/9/6/227 The papaya genome sequence also sheds new light on the primitive ... security needs of the future Sequencing the papaya genome illustrates just how much we not know about plant genomes and how important it will be to generate reference genome sequences at key nodes ... plant species Plant Mol Biol Rep 1991, 9:208-218 International Rice Genome Sequencing Project: The map-based sequence of the rice genome Nature 2005, 436:793-800 Wei F, Coe E, Nelson W, Bharti AK,...

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Báo cáo y học: " Sequencing the regulatory genome" pps

Ngày tải lên : 14/08/2014, 08:21

... specific cell types respond uniquely to high-salt or low-iron stress Genome Biology 2008, 9:313 http://genomebiology.com/2008/9/6/313 Genome Biology 2008, conditions in terms of which genes are up- ... http://genomebiology.com/2008/9/6/313 Genome Biology 2008, from promoters by their enrichment for H3K4me1 over H3K4me3 ... report, namely determination of the specific binding sites for multiple transcription factors and the genome- scale characterization of chromatin states, and to link these with spatial and temporal differences...

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Báo cáo y học: "Closing gaps in the human genome using sequencing by synthesis" pps

Ngày tải lên : 14/08/2014, 21:20

... Olson MZV, Eichler Genome Biology 2009, 10:R60 http://genomebiology.com/2009/10/6/R60 10 11 12 13 14 15 16 17 18 19 20 Genome Biology 2009, EE, Kayl R: Closing gaps in the human genome with fosmid ... diploid genome sequence of an individual human PLoS Biol 2007, 5:e254 Rhesus Macaque Genome Sequencing and Analysis Consortium: Evolutionary and biomedical insights from the rhesus macaque genome ... sequence assembly for mammalian genomes: Arachne Genome Res 2003, 13:91-96 International Human Genome Consortium: Finishing the euchromatic sequence of the human genome Nature 2004, 431:931-945...

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Bài tập Project

Ngày tải lên : 16/08/2012, 14:31

... Project 01: Paint 2.2 Select, Move & Resize - Select :chọn đối tượng cách Click chuột vào vị trí ... lưu chương trình Kết chương trình Chương trình minh họa với giao diện sau: Ths Trần Ngọc Bảo 2/3 Project 01: Paint Dialog Xác lập FillStyle & FillColor Ths Trần Ngọc Bảo Dialog xác lập LineStyle, ... TRƯỜNG ĐẠI HỌC SƯ PHẠM TP,HCM KHOA TOÁN – TIN HỌC http://www.hcmup.edu.vn ĐẶC TẢ YÊU CẦU BÀI TẬP PROJECT 02 Nội dung yêu cầu: Viết chương trình quản lý học sinh với yêu cầu sau 1.1 Cơ sở liệu chương...

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Nguyên lý về 3D và Phép chiếu-Projection

Ngày tải lên : 27/08/2012, 13:55

... z d zd Tham s: centre of projection (COP) field of view (, ) projection direction up direction a similar construction for xp d y yp Perspective Projection Details 0 PROJECTION matrix divide ... Projections Phộp chiu song song - Parallel Projections l phộp chiu m ú cỏc tia chiu song song vi hay xut phỏt t im vụ cựng Phõn loi phộp chiu song song da trờn hng ca tia chiu Direction Of Projection ... 8682595 Phộp chiu Cabinet Oblique Projections Phộp chiu xiờn vi h s co t l f = 1/2 f = cos ( = cos ( + f 2 ) ) = 63.435 + (1 ) 2 D/2 D D D Cavalier Project Cabinet Projection (c) SE/FIT/HUT 2002...

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