... already included in commercial PCR kits This system substitutes uracil for thymine in the PCR, and if the following PCR analyses are initiated with an incubation with a uracil-degrading enzyme ... generated in a single PCR, even minimal amounts of aerosol can contain thousands of DNA copies The essential factor in avoiding cross contamination is to physically separate the pre -PCR and the post -PCR ... uracil-N-glycosylase, contaminating-but not wild-typ*DNA will be degraded (23-25) Implementation of this technology in the PCR analysis has reduced the problem of contamination in most routine PCR laboratories...
... antiviral treatment should be maintained until the clinical diagnosis is confirmed by a new RT -PCR sample Competing interests The authors declare that they have no competing interests References Rello ... protocol is followed Our findings alert us to suboptimal performance of RT -PCR for diagnosis of influenza A (H1N1)v pneumonia, which is important in the decision-making process Only 25% of our ... SEMICYUC Working Group: Intensive care adult patients with severe respiratory failure caused by influenza A (H1N1)v in Spain Crit Care 2009, 13:R148 Ellis J, Iturriza M, Allen R, Bermingham A, Brown...
... 30 9,130 Discharged from ICU 141 63,400 Died in ICU 133 130,000 Discharged from ICU 105 137,000 Died in ICU ICU stay (days) Viremia peak is expressed in copies/ml DBSA, deep burn surface area; ... http://ccforum.com/content/15/2/412 Page of Figure Cytomegalovirus plasma load measurements during ICU stay of four severe burn patients Table Patient characteristics Patient Age (years) TBSA...
... ứng chuỗi polymerase Hình 3.3 Các chu kỳ kỹ thuật PCR Có ba kỹ thuật PCR thông dụng: PCR chuẩn, PCR mỏ neo PCR đảo ngược Trong PCR chuẩn (standard PCR) , DNA khuôn mẫu mở xoắn kép, sau hai primer ... phản ứng PCR trình bày RNA cấu tạo nhờ bốn loại nucleotide (adenine, guanine, cytosine uracil) liên kết với tạo thành chuỗi đơn Khi chuỗi nucleotide biến đổi thành DNA uracil (U) thay thymine (T) ... nucleotide đơn (single nucleotide polymorhism, SNP) VII Một số ứng dụng PCRPCR có phạm vi ứng dụng rộng công nghệ sinh học đại Theo nguyên tắc trên, có nhiều bổ sung cải tiến để dùng PCR cho nhiều...
... This bacterium is included in the genus Sphingomonas (accession number AB110635) The strain C-1 was isolated from Lake Hongfeng in China and this strain is included in the genus Sphingopyxis (AB161684) ... microcystin-degrading bacteria increased to approximately 0.005% of the total bacteria The number of cells increased in fall, and the number of microcystin-degrading bacteria increased with the increase ... of microcystin-degrading bacteria in water environment We estimated microcystin-degrading bacteria in a biofilm from a practical biological treatment facility by real-time PCR using the newly...
... functional domain mapping of proteins where fragments that represent protein domains are expressed and functionally analyzed using in vitro assays Furthermore, rapid in vitro protein–protein interaction ... electrophoresis (A) Initial PCR amplification product using two original flanking primers (primers and 2); (B) nested PCR from the primary PCR amplification product using one original flanking primer (primer ... detected by a scintillation counter In practice the SPA beads are coated with streptavidin that binds biotin If one of the PCR primers is biotinylated then during amplification in the presence...
... Meignanalakshmi and Mahalinga Nainar genotyping beta-lactoglobulin in Sahiwal and Tharparkar catte breeds Milk protein genes might be useful as genetic marker and is a promising alternative to the ... Central cattle breeding farm, Alamadi, Tamilnadu Individual blood samples of ml each were collected from 110 Murrah buffaloes using ml vacuitainer tubes containing EDTA from jugular vein and stored ... in 262 bp fragment in cattle The same primers were used for amplifying b-lg gene in Murrah buffaloes Genomic DNA Isolation Blood samples collected in a vacuitainer containing EDTA were transferred...
... the general use of in- house PCRin a real world setting, since PCR methods vary widely with setting and the data herein may not be generalizable Conclusions In- house PCR is inefficient for diagnosis ... HIV/TB co-infection The sensitivity for the in- house PCRin the Table More performance indices for In- house PCR Performance Indices five (5/186) had the corresponding LJ culture results contaminated ... hoods were decontaminated by turning on UV light Negative controls were included in each PCR batch to detect cross-contamination during premixes To determine the effect of PCR inhibitors, reactions...
... tissues including the gastrointestinal tract, the immune system and the brain [5] It is a central neurotransmitter in the brain and is formed in the posterior hypothalamus from exogeneous histidine ... associated with schizophrenia in British Caucasians [6] In the present study, we applied PCR- RFLP in investigating the frequency of such SNPs in Vietnamese subjects as our preliminary assessment [7] For ... Val at position 40 instead of Ala, have been found with varied frequencies across populations These findings demonstrated that the opioid system is involved in the reinforcing properties of alcohol...
... after pepsin treatment starting with 70% ethanol in O.OlMHCl helps in preserving cell morphology (manuscript in preparation) In the case of labeling with biotin- 16-dUTP or fluorescein- 12-dUTP, ... fluorored (red) in a frozen tissue section of normal bladder epithelium after PRINS and PBS/glycerol/DABCO embedding with DAPI counterstaining Materials 2.1 PRINS DNA Labeling Pepsin from porcine stomach ... the APase reaction, since the precipitate dissolves (partially) in organic solvents Optionally, you may air-dry the slides after rinsing in distilled water Embedding in a protein layer is essential...
... positive cells in combination with the high inter-assay variability that is expected in flow cytometric methods This finding supported our clinical testing regimen; all longitudinal frozen PBMC ... analyte in biological matrix (matrix effect) is defined as the direct or indirect alteration or interference in response due to the presence of unintended analytes or other interfering substances in ... Co-staining with anti-CD3 showed decrease tetramer binding probably due to proximity of CD3 and TCR, therefore anti-CD3 staining was not used Fixed cells were shown to have decreased binding as...
... Minjolle S, Arvieux C, Gautier AL, Jusselin I, Thomas R, Michelet C, Colimon R: Detection of herpesvirus genomes by polymerase chain reaction in cerebrospinal fluid and clinical findings J Clin ... facilitate the routine diagnosis of herpesviruses infections, within a single assay, single clinical sample, thereby allowing earlier application of specific antiviral treatment and better clinical management ... Ausina V: Usefulness of adding multiplex nested-polymerase chain reaction assay of cerebrospinal fluid samples to routine diagnostic testing for herpesvirus encephalitis Eur J Clin Microbiol Infect...
... (without primer binding sites) of the DPOL gene [2] was carried out in a nested format with the degenerate and deoxyinosine-containing (deg/dI) primers DFA, ILK and KG1 in the first PCR round and ... present in a copy number repre- senting its individual detection limit in the pan-herpes PCR The other two templates were present in 10-fold excess over their individual detection limit Pan-herpes PCR ... Dirand C, Varin A, Chen W, Herbein G: Mixed cytomegalovirus glycoprotein B genotypes in immunocompromised patients Clin Infect Dis 2004, 39:155-161 Pignatelli S, Dal Monte P, Rossini G, Landini MP:...
... combination of both methods greatly speeds up ascertaining when a NoV outbreak is occurring and which strain is responsible A SYBR green mastermix containing a proof reading enzyme would again ... panel are shown on the left binding to there respective probes Clinical samples binding to probe GII/4 can be seen on the right of both A and B Biotinylated RT -PCR Biotinylated reverse primers G1NVR ... curve of GII assay R2 1.00 and a slope of -3.7 was obtained (C) Melting curve of GII standards showing melting point at 88°C in descending order × 107 – × 101 molecules described here would be...
... ranked actin at the last position, indicating that it is an unsuitable reference gene in virus infected cells The actin gene shows significant variations with increasing degree of infection The ... data set according to the Bestkeeper tool revealed very good BestKeeper indices; even actin was included into our gene panel These findings demonstrate the usefulness of analysing a wide variety ... 11.28), confirming to be the most inappropriate reference gene It is remarkable that the obtained BestKeeper index values are low, despite the inclusion of Act in the calculation Calculating BestKeeper...
... dependent increase in CT for RNA amplification was also noted, with incubation temperatures of 25°C and 30°C resulting in smaller increases in CT values for RNA detection than incubation at 35°C Incubation ... standards that did not contain UNG and were not incubated prior to RT -PCR The yintercept value for the reactions not containing UNG and incubated at 30°C for 20 prior to RT -PCR was intermediate of the ... concentrations in reactions containing UNG To determine if UNG addition and incubation prior to RTPCR would result in false negative results under the conditions described, 96 replicate samples containing...
... specific binding assay HSV type was confirmed in samples in which an equivocal typing result was initially obtained HSV type was confirmed by repeating the realtime assay using the Rotorgene 3000 instrument ... typing in a single step This may have circumvented problems relating to sensitivity of the HSV-1 and -2 probe relative binding In a single step multiplex assay mutations in the probe binding area ... mutations in the probe binding area The remaining samples resulted in poor quality sequencing reactions and the results were not interpretable Discussion Diagnostic methods, ranging from traditional...
... Minjolle S, Arvieux C, Gautier AL, Jusselin I, Thomas R, Michelet C, Colimon R: Detection of herpesvirus genomes by polymerase chain reaction in cerebrospinal fluid and clinical findings J Clin ... facilitate the routine diagnosis of herpesviruses infections, within a single assay, single clinical sample, thereby allowing earlier application of specific antiviral treatment and better clinical management ... Ausina V: Usefulness of adding multiplex nested-polymerase chain reaction assay of cerebrospinal fluid samples to routine diagnostic testing for herpesvirus encephalitis Eur J Clin Microbiol Infect...