oscesa csl superfamily in rice

báo cáo khoa học: " Expression profiling and integrative analysis of the CESA/CSL superfamily in rice" doc

Ngày tải lên : 11/08/2014, 11:21

... 16 CSLA1 CSLA4 CESA1 CSLD2 CSLA3 10 CSLH2 CSLH3 20 25 CESA4 30 35 CSLD5 CSLA5 15 CSLE2 CSLA6 CSLC1 CSLC7 CESA11 CSLA9 CSLC10 CESA8 CESA6 CESA3 CSLF9 CSLF8 CSLF2 CSLF1 CSLF4 CSLF3 CSLA7 10 CSLF6 ... duplication sets (OsCSLH2/CSLH3 and OsCSLE1/CSLE6) and seven segmental duplication sets (OsCESA2 /CESA8, OsCSLA1/CSLA9, OsCSLA2/CSLA4, OsCSLA5/CSLA7, OsCSLA6/CSLA3, OsCSLC9/CSLC10 and OsCSLE2/CSLE6) that ... d t In e s te r Yo nod un e An g p t a Hu her nic le ll OsCESA/ CSL co-expression profiling OsCESA1 OsCESA2 OsCESA3 OsCESA4 OsCESA5 OsCESA6 OsCESA7 OsCESA8 OsCSLD1 OsCSLD2 OsCSLD3 OsCSLD4 OsCSLD5...

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Tài liệu Báo cáo khoa học: cN-crystallin and the evolution of the bc-crystallin superfamily in vertebrates pdf

Ngày tải lên : 19/02/2014, 17:20

... crystallins Prog Biophys Mol Biol 86, 407–485 Kosinski-Collins MS, Flaugh SL & King J (2004) Probing folding and ﬂuorescence quenching in human gammaD crystallin Greek key domains using triple ... speculated that intron loss in the c-lineage (or gain in the b-crystallin lineage) must have occurred in a one domain ancestor which later duplicated [4,45] cN suggests that intron loss occurred ... family heading for extinction by reduplication of a surviving gene, followed by another decline in expression in some lineages, particularly primates In addition to the distinctive grouping of b...

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Báo cáo khoa học: Binding afﬁnities and interactions among different heat shock element types and heat shock factors in rice (Oryza sativa L.) ppt

Ngày tải lên : 05/03/2014, 23:20

... heteromeric interactions, using yeast two-hybrid assays (Fig 5) In this assay, OsHsfs fused to the Gal4 DNA binding domain and activation domain were expressed in yeast cells containing a Gal4-regulated ... provided support in indicating that Hsfs show protein–protein interactions This technique has also been used for visualization of the subcellular locations of the interacting proteins in the cell ... hetero-oligomers with HsfA4, thereby interfering in the HsfA4 DNA binding capacity and thus acting as a selective repressor [24] In addition to Hsf–Hsf interactions, a large body of information has been accumulated...

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Báo cáo khoa học: Transcript proﬁling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice pdf

Ngày tải lên : 07/03/2014, 01:20

... carried out in other plants The recent advances in genomics provide opportunities to investigate these pathways in crop plants To gain insights into the molecular mechanism of auxin action in rice, ... that genes involved in cytokinin (e.g cytokinin-Oglucosyltransferase, cytokinin dehydrogenase, and response regulators), ethylene (e.g ethylene-responsive transcription factor, 1-aminocyclopropane-1-carboxy3150 ... responsiveness of auxin-responsive genes These results indicate the existence of a complex system, including several auxin-responsive genes, that is operative during stress signaling in rice Although...

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Quantification of vitamin e and ç oryzanol components in RiceGermandBran

Ngày tải lên : 15/03/2014, 15:33

... Full-fat raw rice bran as a byproduct during the milling process for the production of white rice was used to obtain two samples: intact rice germs (RGs) and full-fat raw rice bran without intact germ ... could not be obtained in LC−MS/MS analysis because of its very low concentration in the dichloromethane fraction milling process According to the information of Riceland Foods, Inc., rice germ is ... Structures of vitamin E and γ-oryzanol components examined in this study However, commercial rice bran is a mixture of rice bran and rice germ (20% of rice bran), and the difference in the chemical...

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Cadmium and lead contents in rice and other cereal

Ngày tải lên : 15/03/2014, 23:22

... because Cd in wheat grain is higher in bran and lower in albumen so that Cd in ﬂour after milling is much lower Že.g approx 40% than that in the whole grain ŽZhang et al., 1997 The inter-area ... boiling in the kitchens; in the stores, both locally harvested rice as well as nation-widely marketed rice are available In contrast, store-bought boiled rice is supplied by food processing industries, ... composition in Japan, 5th revised version Tokyo: Ministry of Finance Printing Bureau, 2000 p 40, in Japanese with English translation Rivai F, Koyama H, Suzuki S Cadmium content in rice and its daily intake...

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advances in rice genetics pdf

Ngày tải lên : 17/03/2014, 16:20

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Scientific report: "The photosynthesis and root characteristics associated with drought tolerance in rice" potx

Ngày tải lên : 06/08/2014, 18:21

... were set in green house in Faculty of Agronomy, Hanoi University for Agriculture, Vietnam during spring cropping season in 2006 2.2 Planting Seed of rice cultivars were incubated and sown in the ... decreased under drought condition (measured days after draining) and increased in recovering stage (4 days after watering) The CER decreased in wild rice (Oryza Rufipogon; from 31.23 molm2 -1 s to 18.46 ... and transpiration rate (Tr) in rice cultivars before draining (A), days after draining (B) and days after recovering stages (C) Note: Symbols were the same as shown in Fig.1 Photosynthetic and...

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báo cáo khoa học: " Analysis of anther transcriptomes to identify genes contributing to meiosis and male gametophyte development in rice" pptx

Ngày tải lên : 11/08/2014, 11:20

... components included those involved in calcium-mediated signaling, e.g calcium dependent protein kinases, caleosins and other proteins containing C2 domain and EF hands Genes involved in secondary ... hybridization, washing, staining and scanning of the chips were done according to the manufacturer’s protocol GeneChip® Operating Software 1.2.1 (GCOS) was used for washing and staining of the chips in a Fluidics ... analysis involving comparison of adjacent stages revealed an interesting pattern showing a steady and significant increase in the number of genes activating in post-meiotic stages (i.e., in SCP...

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báo cáo khoa học: "Real-time imaging and analysis of differences in cadmium dynamics in rice cultivars (Oryza sativa) using positron-emitting 107Cd tracer" ppsx

Ngày tải lên : 11/08/2014, 11:21

... complaints of spinal and leg bone pain, was recognized as a type of chronic toxicity induced by excess Cd contamination of drinking water and cereals (mainly rice) Since then, the contamination ... The initial increasing slopes (Figure 4c and d, circled plots) were fitted with lines depicting the kinetics of initial arrival of Cd in the respective ROI The X-intercepts of the fitting lines ... determining Cd levels in grains, because Cd moves to developing grains via the phloem [13, 14] Tanaka et al [15] estimated that 91–100% of Cd in rice grains was deposited from the phloem when rice...

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báo cáo khoa học: " Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed" pptx

Ngày tải lên : 11/08/2014, 11:21

... tolerance in rice seedlings Overexpression of OsCYP2 conferred salt tolerance in transgenic rice seedlings Although OsCYP2-transgenic seedlings did not predominate over wild-type seedlings in ion ... proline residue and the preceding residue, and functions as a molecular chaperone involved in protein folding, and refolding of denatured proteins OsCYP2 possesses seven residues, including His-61, ... OsCYP2 in hybrid rice seedlings (A) West blot showed expression of OsCYP2 in roots and shoots in 10-day-old rice seedlings (B) RT-PCR showed time-course expression of OsCYP2 in seedlings of rice...

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báo cáo khoa học: " Molecular and functional analyses of COPT/Ctrtype copper transporter-like gene family in rice" pdf

Ngày tải lên : 11/08/2014, 11:22

... manufacturer’s instructions In this system, COPT proteins fused with both the C-terminal half of the ubiquitin protein (Cub) and the mutated N-terminal half of the ubiquitin protein (NubG) Cub could not interact ... heteromeric interactions of COPTs AIg5, a transmembrane protein with C terminal in the cytoplasm; NubI, N-terminal half of ubiquitin protein; NubG, mutated N-terminal half of ubiquitin protein; Cub, ... deficiency in root (Figure 8a) Xoo strain PXO99 induced expression of COPT1 and COPT5, which encoding proteins interacted with XA13 protein to facilitate Xoo infection [29] To ascertain whether...

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báo cáo khoa học: " Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice" pdf

Ngày tải lên : 12/08/2014, 03:20

... harbouring a digestion site of enzyme BamHI (in bold) The PCR product was ligated into the EcoRI/BamHI cloning site of vector pGADT7-Rec2 containing a GAL4 activation domain The target cis-acting ... listed in Additional file 3: bHLH, AP2/EREBP, MADS, NAC, MYB, EIL, and CCAAT-binding protein) were identified in OsWRKY13-influenced genes (Table 1) Among these cis-elements, Myb3 for binding of ... QJ: Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells Plant J 2006, 46:231-242 Zhang ZL, Xie Z, Zou X, Casaretto J, Ho TH, Shen QJ: A rice...

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báo cáo khoa học: " Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice" ppsx

Ngày tải lên : 12/08/2014, 03:20

... mPing-containing values(ITDTA6) (b)sequencing (V27), a pool ofmPing-containing locus Cytosine methylation maps and collective methylation values (in percentage) for an inactive (immobile) mPing-containing ... status of an inactive (immobile) and an active mPing-containing loci determined by bisulfite genomic sequencing To further investigate the difference in cytosine methylation between inactive (immobile) ... mPing exci- Figure of the tissue culture-induced mPing activity and alteration in cytosine methylation in the three rice ssp indica cultivars Summary Summary of the tissue culture-induced mPing...

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báo cáo khoa học: " The cellulose synthase superfamily in fully sequenced plants and algae" pps

Ngày tải lên : 12/08/2014, 03:21

... 0.0 CslA CslC CesA CslD CslF CslB CslH CslE CslG CslJ 1.0 Dicot plants CslA CslC CesA CslD CslF CslB CslH CslE CslG CslJ c) Monocot plants d) 0.8 0.6 0.4 0.2 0.0 CslA CslC CesA CslD CslB CslE CslG ... nonparametric Wilcoxon test P values (Csl family in the column vs in the row) All plants (a) CslA CslC cesA CslD Seed plants (b) CslA CslC cesA CslD CslF CslB CslH CslE CslG CslJ 0.1584* 3.36e-05 0.0307 ... Table 2: Sizes (number of genes in each family) of Csl families in 17 plant and algal genomes Abbr a) GenomeSizeb) Sum CesA CslD CslF CslB CslH CslE CslG CslJ CslA CslC Tp Pht Aa Cm Mpc Mpr Ol Ot...

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báo cáo khoa học: " Characterization of WRKY co-regulatory networks in rice and Arabidopsis" ppsx

Ngày tải lên : 12/08/2014, 03:21

... zinc finger motif, whose pattern of potential zinc ligands CX4-5 -CX22-23 -HXH is unique among all known zinc-finger-like motifs The single zinc finger motif of a small subset of WRKY proteins ... method using all 104 proteins containing a single or double WRKY domain, divided the genes into main phylogenetic groups (Figure 1) Additional sub-groups and smaller clades were identified within each ... validated and innovative approach that aims at finding such interacting proteins relying not on their sequence similarity, but rather on coregulation at the transcriptome level Our integrated riceArabidopsis...

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báo cáo khoa học: " Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa)" pps

Ngày tải lên : 12/08/2014, 03:21

... flowering, the floret opens due to swelling of the lodicules, and closes after a few minutes (depending on temperature and humidity) due to shrinking of the lodicules In plants over-expressing ... to differences in the miRNA* sequences It has been shown that miR172b is expressed in seedlings and developing grains [8,10,12], whereas miR172c is not detected in developing grains [12] miR172a/d ... performed using RNA isolated from two-leaf stage shoots, 1-10 DAF grains and booting panicles (BP) Cleavage of Os04g55560 was detected in a mixed sample of shoot and grain as well as in booting panicles;...

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báo cáo khoa học: " Discovery of chemically induced mutations in rice by TILLING" potx

Ngày tải lên : 12/08/2014, 05:20

... preliminary testing, we determined toxicity levels by treating with MNU as indicated below and germinating about 250 seeds In two preliminary tests we observed respectively 49 and 56% germination ... occasional mixing Rinsing with ultrapure water was performed as described, followed by rinsing under running tap water for hour Seeds were sown in flats and germinated in the greenhouse Young seedlings ... polymorphisms in multiple genes in the same individual [18,41] In such cases, however, occasional concurrent mutations found either in the same gene of the same individual, or in other genes of the same individual...

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báo cáo khoa học: " Characterization of paralogous protein families in rice" ppt

Ngày tải lên : 12/08/2014, 05:20

... proteins were identified in rice which encoded proteins such as zinc finger proteins, protein kinases, Myb-like proteins, and transducins [see Additional file 2], similar to the largest protein ... families in rice Singletons in rice Paralogous families in Arabidopsis Singletons in Arabidopsis Figure proteins 2in rice and Arabidopsis Functional classification of paralogous family and singleton ... Two-sample binomial tests for GOSlim assignments of paralogous family and singleton proteins in rice GOSlim assignmenta Binding, otherb Carbohydrate bindingc DNA bindingb Hydrolase activityb Kinase...

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báo cáo khoa học: " Development of a novel data mining tool to find cis-elements in rice gene promoter regions" pdf

Ngày tải lên : 12/08/2014, 05:20

... corresponding information from RiceCyc [19] and Gene Ontology [20] RiCES also provides information on candidate motifs, including the positions of the element in the promoter regions of corresponding ... G, Guilfoyle TJ: A G-box-binding protein from soybean binds to the E1 auxin-response element in the soybean GH3 promoter and contains a proline-rich repression domain Plant Physiol 1997, 115:397-407 ... Ohmiya K, Hattori T: RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants Nucleic Acids Res 1999,...

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