... 16 CSLA1 CSLA4 CESA1 CSLD2 CSLA3 10 CSLH2 CSLH3 20 25 CESA4 30 35 CSLD5 CSLA5 15 CSLE2 CSLA6 CSLC1 CSLC7 CESA11 CSLA9 CSLC10 CESA8 CESA6 CESA3 CSLF9 CSLF8 CSLF2 CSLF1 CSLF4 CSLF3 CSLA7 10 CSLF6 ... duplication sets (OsCSLH2/CSLH3 and OsCSLE1/CSLE6) and seven segmental duplication sets (OsCESA2 /CESA8, OsCSLA1/CSLA9, OsCSLA2/CSLA4, OsCSLA5/CSLA7, OsCSLA6/CSLA3, OsCSLC9/CSLC10 and OsCSLE2/CSLE6) that ... d t In e s te r Yo nod un e An g p t a Hu her nic le ll OsCESA/ CSL co-expression profiling OsCESA1 OsCESA2 OsCESA3 OsCESA4 OsCESA5 OsCESA6 OsCESA7 OsCESA8 OsCSLD1 OsCSLD2 OsCSLD3 OsCSLD4 OsCSLD5...
... and gained introns Distribution of the sizes of the lost and gained introns Intron lengths were binned into 100 bp bins and the number of lost and gained introns in each bin was determined and ... To examine whether there was a bias in the phase of intron loss in segmentally duplicated genesin rice, we examined the 34 independently lost introns and excluded genes with multiple intron ... an intron loss(es) (43 intron losses in total), one gene pair with a single gained intron, and four gene pairs in which both intron loss and gain were observed (6 intron losses and intron Intron...
... responsiveness of auxin-responsive genes These results indicate the existence of a complex system, including several auxin-responsive genes, that is operative during stress signaling inrice Although ... probable role of auxin-responsive genesin reproductive development and abiotic stress signaling inrice Transcript profiling of auxin-responsive genes study from our laboratory, the rice coleoptile ... carried out in other plants The recent advances in genomics provide opportunities to investigate these pathways in crop plants To gain insights into the molecular mechanism of auxin action in rice, ...
... The amino-acid sequence analysis of rice TOP6 proteins also predicted several potential putative phosphorylation sites for casein kinase II, protein kinase C, tyrosine kinase, histidine kinase, ... with SPO11, a protein involved in inducing double-strand breaks to initiate meiotic recombination in eukaryotes [8,9] Their existence has also been shown in plants [10–14] In contrast with other ... OsTOP6A3 and OsTOP6B increased up to 3–5-fold in 5248 the presence of abscisic acid (ABA) within h inrice seedlings (Fig 3) Interaction of rice TOP6B protein with TOP6A homologs TOP6 in archaebacteria...
... plants This is because there are AOS genesin the rice genome As shown in fig 2, five different rice AOS genes 14 have been identified The alignment of the rice AOS genes with a primer pair, which ... endogenous JA in rice, we try to over express AOS genes by transforming AtAOS2 gene to the rice genome Fig The octadecanoid pathway leading to jasmonic acid (JA) biosynthesis in plants AOC: ... according to the PCR Amplification Kit by using HiPi PCR Premix (ELPis Biotech, Korea) in a 20 µl reaction volume, with thermal cycling parameters as follows: initial denaturation at 94 0C for min;...
... determine whether genes homologous to SRY were present in the genome of the rice field eel, a probe containing an 800 bp fragment of human SRY including the conserved HMG box domain was used in this ... We therefore investigated the existence, and DNA sequences of SRY-related genesin the rice field eel to assist in developing methods for understanding and controlling sex phenotype in this species ... the related genes Sox9 and Sox17 fall into groups E and F respectively, which contain one intron interrupting their HMG domain encoding regions The organization of the Sox family into seven groups...
... components included those involved in calcium-mediated signaling, e.g calcium dependent protein kinases, caleosins and other proteins containing C2 domain and EF hands Genes involved in secondary ... hybridization, washing, staining and scanning of the chips were done according to the manufacturer’s protocol GeneChip® Operating Software 1.2.1 (GCOS) was used for washing and staining of the chips in a Fluidics ... elongation factors There were also genes coding for LSM (like-Sm) domain containing and RNA recognition motif proteins that are known for their involvement in pre-mRNA processing [50,51] A major proportion...
... Parkin, PINK1, DJ-1 and HtrA2 activity remains to be determined Parkin can be phosphorylated by a number of kinases including casein kinase 1, protein kinase A, protein kinase C [86] and cyclin-dependant ... inactivation of Drosophila PINK1 using RNAi suggested that PINK1 maintains neuronal survival by protecting neurons against oxidative stress [79] In mammalian cell culture, PINK1 protects against ... Interestingly, susceptibility to rotenone toxicity is increased in neurons from Parkin-null mice [39] PINK1 suppression using small interfering RNA decreased cell viability and significantly increased...
... Grain seedling seedling Isopentenyladenine Isopentenyladenosine Isopentenyladenosine monophosphate Isopentenyladenine-9-glucoside Zeatin Zeatin riboside Zeatin ribotide Zeatin-9-glucoside Zeatin ... seedlings The measured values are summarized in Table The total cytokinin content in the grains was approximately threefold lower than in young seedlings The increase was mainly observed in the ... leaves Seedling green leaves Epidermis (seedlings) Seedling apex Genomic DNA Grains Drought-stressed seedlings Drought-stressed seedlings Puccinia-infected leaf Grains Seedlings Fusarium-infected...
... PrP sequences Amino acid numbering starts from the initiator methionine Gaps inserted to optimize alignments are indicated by dashes Numbers in parentheses in the alignments indicate the length ... of interest because in terms of function, the fish intestine is highly regionalized both in the larva and in the adult [38] The posterior segment of the fish intestine is the absorption site of intact ... system [41,42], and in epithelial cells lining the digestive tract lumen [43,44] Considering the importance of the intestinal barrier in the process of oral prion infection, this finding might help...
... HSEs in the 1-kb promoter region of ricegenes P, G and S indicate classes of genes which contained P-type, G-type or S-type in any combination, in totality P*, G* and S* indicate classes of genes ... inrice D Mittal et al analyzed how many of the HS induced ricegenes from the microarray profiling contain the above HSE configurations A total of 880 genes showed HS induced transcript profiling ... heteromeric interactions, using yeast two-hybrid assays (Fig 5) In this assay, OsHsfs fused to the Gal4 DNA binding domain and activation domain were expressed in yeast cells containing a Gal4-regulated...
... [23] in grass PSYs, differences in the N-terminus as well as the C-terminus of the two proteins may result in differences in their plastid localization Transcription analysis of the two genes using ... Psy2 genesin the coding sequence region The two genes were shown to have a highly conserved structure, with seven exons being almost identical and six introns being much more variable in sequence ... converted to violaxanthin In plants, carotenoids are mainly involved in photosynthesis as accessory pigments, in photoprotection (quenching and xanthophylls cycle) and in the formation of abscisic...
... Genotyping by real-time PCR Fig Plasma cortisol levels in the three Angora genotypes (n = 10 per group) following intravenous insulin injection Plasma glucose levels are shown in the inset The ... and an increase in plasma cortisol levels in response to insulin injection (Fig 6) However, although the decrease in plasma glucose was similar for all groups, the amplitude of the response in cortisol ... physiological effect of this novel finding was investigated by testing goats of each genotype for their ability to produce cortisol in response to intravenous insulin injection The results of this study...
... candidate genes corresponding to missing enzymes in this pathway There are two paths from l-lysine to glutarate in the lysine-degradation pathway: l-lysine fi 5-amino pentanamide fi 5-amino pentanoate ... protein HtpG succinate dehydrogenase (A subunit) (EC 1.3.99.1) probable cytochrome c pyrroloquinoline quinone biosynthesis protein A hypothetical protein hypothetical protein branched chain amino ... the lysine-degradation pathway in P aeruginosa We filled in some of the enzyme genesin the lysinedegradation pathway, for example, by predicting PA0266 as a putative 5-aminovalerate aminotransferase...
... Spener F (2002) Insights into ¨ binding of fatty acids by fatty acid binding proteins Mol Cell Biochem 239, 45–54 31 Borchers T & Spener F (1993) Involvement of arginine ¨ in the binding of heme ... mammalian FABP1 during zebrafish embryogenesis The distinct patterns of expression for the fabp1b (in the intestine) and fabp10 (in the liver) genesin the developing zebrafish combined represent the ... established in the intestine during the late fetal stage The mRNA concentration in the intestine increases sharply by three- to four-fold within 24 h of birth and increases another two-fold during the...
... conserved in a bc-crystallin fold The residues shown in grey indicate the side chains and backbone sites that are involved in calcium binding [24] The residues in the conserved tyrosine corners are in ... single domain fold The stability of these two proteins is highly dependent on calcium binding [25] The typical domain motives contain a ‘tyrosine corner’ in the domain centre as seen in proteins ... FEBS N Pinchai et al in Protein S (7) or spherulin 3a (2) NKA48 (1) differs from all of these proteins by not containing a tyrosine in a corresponding position In contrast to NKA48, spherulin 3a...
... specific binding was determined by the relative intensity of ethidium bromide fluorescence when compared to the input control Our data show that the RAR binding was almost undetectable in vitamin A-deficiency ... controls, while in acute hypervitaminosis the binding was significantly higher These changes in the RAR–DNA binding is not due to different levels of the retinoic acid receptor induced by the treatment, ... of p53 protein was significantly increased in the liver and lung from vitamin A-deficient rats that in controls c-Jun protein was significantly decreased in vitamin A-deficient rats In the liver...
... Full-fat raw rice bran as a byproduct during the milling process for the production of white rice was used to obtain two samples: intact rice germs (RGs) and full-fat raw rice bran without intact germ ... could not be obtained in LC−MS/MS analysis because of its very low concentration in the dichloromethane fraction milling process According to the information of Riceland Foods, Inc., rice germ is ... Structures of vitamin E and γ-oryzanol components examined in this study However, commercial rice bran is a mixture of rice bran and rice germ (20% of rice bran), and the difference in the chemical...
... because Cd in wheat grain is higher in bran and lower in albumen so that Cd in flour after milling is much lower Že.g approx 40% than that in the whole grain ŽZhang et al., 1997 The inter-area ... boiling in the kitchens; in the stores, both locally harvested rice as well as nation-widely marketed rice are available In contrast, store-bought boiled rice is supplied by food processing industries, ... composition in Japan, 5th revised version Tokyo: Ministry of Finance Printing Bureau, 2000 p 40, in Japanese with English translation Rivai F, Koyama H, Suzuki S Cadmium content inrice and its daily intake...
... Intracellular lipid-binding proteins and their genes Annu Rev Nutr 17, 277–303 Schaap FG, van der Vusse GJ & Glatz JFC (2002) Evolution of the family of intracellular lipid binding proteins in ... partial amino acid sequencing of an amphibian liver fatty acid binding protein Biochem Cell Biol 74, 109–115 ´ ´ ´ Cordoba OL, Sanchez EI & Santome JA (1999) The main fatty acid-binding protein in the ... fatty acidbinding proteins: their function and physiological significance Prog Lipid Res 35, 243–282 16 Ong DE, Newcomer ME & Chytil F (1994) Cellular retinoid-binding proteins In The Retinoids:...