Báo cáo khoa học: Probing the determinants of coenzyme specificity in Peptostreptococcus asaccharolyticus glutamate dehydrogenase by site-directed mutagenesis potx
... examined the possi-
bility of altering coenzyme specificity of the Peptostreptococcus enzyme,
and, more specifically, the role of residue 243 and neighbouring residues in
coenzyme binding, by introducing ... Probing the determinants of coenzyme specificity in
Peptostreptococcus asaccharolyticus glutamate
dehydrogenase by site-directed mutagenesi...
... chain of the FA. The importance
of the interaction between an aromatic tyrosine and
the phenolic ring of the substrate is consistent with the
biochemical specificity of this enzyme [4,24]. The ... resulting from the
disposition of the equatorial and axial hydroxyls to
one side of the pyranose ring of a sugar monomer,
aligns itself upon binding with the aro...
... trans-
membrane helix anchoring the protein to the inner
membrane of mitochondria [27]. Therefore, the N-ter-
minal segment (containing the residues protruding into
the mitochondrial matrix, the transmembrane ... function of the CXXXC
motif of human Sco proteins could therefore be impli-
cated not only in the maturation of the Cu
A
site of
Cox2 but also in the...
... when the
crystal structure of the spinach enzyme was deter-
mined, first in the presence of the inhibitor IpOHA [8]
and later with product bound in the active site [9].
There are several interesting ... both valine and leucine. The third
branched-chain amino acid, isoleucine, is produced in
a pathway that parallels that of valine, employing
the same series of enzyme...
... given by electrostatic calculations indicating that
the redox state of the binuclear center in uences the
protonation state of a glutamate residue positioned at
the cytoplasmic end of the second ... band
width of the contribution at 1718 cm
)1
indicates that
residues close to the surface, or in the vicinity of sev-
eral water molecules are involved here. Com...
... documents and find that the fea-
ture vectors corresponding to some of these docu-
ments (particularly the short ones) have all zeroes
in them. In other words, none of the bigrams from
the training set ... available.
612
Finally, previous work has also investigated fea-
tures that do not fall into any of the above cate-
gories. For instance, instead of representing the...
... respect to the positioning of the ligands and
the conformations of the residues lining the binding
site (Table 2). In an initial comparison of the ligand
positions of tetracycline, dox and atc in TetR, ... shown in grey and blue). The stereo represen-
tation shows that the binding position of the ligands and the orientations of the side chains lining t...
... was determined
on the basis of the possible binding sites identified by
the Site Finder function in moe, as well as the relative
position of the indole substrate in the crystal structure
of naphthalene ... probe
the residues determining the activity as well as the sub-
strate specificity of AtdA, using molecular modeling
and saturation mutagenesis of the...
... 5 min, the reaction was initiated by
the addition of 10 lL of enzyme solution (0.83 mgÆmL
)1
).
After 3 min, the reaction was stopped by the addition of
100 lL of concentrated HCl; after mixing, ... contacts with their equiv-
alents in the other subunit of the second dimer
(Fig. 4A). In the case of P2
1
2
1
2(TcRpiB-R5P), the
four molecules in the asymm...
... The reaction rate was deter-
mined at 25 °C by measuring the linear increase in absor-
bance at 400 nm during the initial 5 min. Control
experiments were carried out in the absence of NAT2. The
slope ... centroid of the
His107 imidazole ring and the planes of the two ring
systems intersect at an angle of $ 30°, Tyr190 and
His107 interact by a common aromatic st...