Tài liệu Báo cáo khoa học: Post-translational cleavage of recombinantly expressed nitrilase from Rhodococcus rhodochrous J1 yields a stable, active helical form ppt
... FEBS
Post-translational cleavage of recombinantly expressed
nitrilase from Rhodococcus rhodochrous J1 yields a
stable, active helical form
R. Ndoria Thuku
1,2
, Brandon W. Weber
2
, Arvind Varsani
2
and B. ... specific
post-translational cleavage of recombinantly expressed
nitrilase from R. rhodochrous J1 which leads to the for-
mation of st...
... substrate-free
AppA the C
a
atoms are 2.41 A
˚
apart, whereas for the
substrate-free PhyK and the substrate-loaded AppA
the averaged distance is only 1.87 A
˚
.
Distinct conformational changes ... phytate with pH optima in the
acidic range. They consist of two domains, a large a ⁄ b
domain and a small a domain with the catalytic site at
the interface of the two domains [4,5]...
... MPH
a
Forward: 5¢-TAGAATTCGCTGCTCCACAA
GTTAGAACT-3¢
Reverse: 5¢-TA
GCGGCCGCTTACTTTGGGTTA
ACGACGGA-3¢
Mutant MPH
b
G194P 5¢-CCTGACGATTCTAAACCGTTCTTCAAGGGTGCC-3¢
G198P 5¢-AAAGGTTTCTTCAAG
CCGGCCATGGCTTCCCTT-3¢
G194P ... Gribenko AV, Patel MM, Liu J, McCallum SA, Wang
C & Makhatadze GI (2009) Rational stabilization of
enzymes by computational redesign of surface charge-
charge interacti...
... result.
Classifier and data sets As a classifier, we
chose Naive Bayes with bag -of- words features,
because it is one of the most popular one in this
task. Negation was processed in a similar way as
previous ... works (Pang et al., 2002).
To validate the accuracy of the classifier, three
data sets were created from review pages in which
the review is associated with meta-data. To buil...
... reactive non-
cleaved glycoform of about 105–120 kDa (Fig. 4A, C,
MUC3SEA and MUC12SEA) and a minor population
of a CT-2 reactive, M2 nonreactive cleavage product,
at about 25 kDa for MUC3 and ... 5¢-GTTCAGGCCAGGAGCTGTGGTG
GTACAATTG-3¢ (sense), 5¢-CAATTGTACCACCACAG
CTCCTGGCCTGAAC-3¢ (antisense), R ⁄ A substitution:
SEA modules and mucin cleavage T. Palmai-Pallag et al.
2908 FEBS...
... lyase pathway). Bottom: cleavage to
yield AMPA and glyoxylate (the AMPA
pathway), referred to as the GOX pathway.
(B) Reaction catalyzed by GO on glyphosate,
an alternative to the AMPA pathway ... different from that of
GOX.
Oxidases
GOX (Monsanto)
Early on, Monsanto Co. isolated glyphosate-AMPA
bacteria from a glyphosate waste stream treatment
facility. Achromobacter sp. LBAA was t...
... blotting of lysates from pervanadate-treated
cells with an antibody against total tau revealed
decreased electrophoretic mobility of tau, with the
appearance of an 68-kDa tau species in wild-type and
all ... Pervandate and catalase were
prepared as described previously [25]. Briefly, vanadate
stock solution was prepared as a 200 m
M solution of
sodium orthovanadate (pH 10). Perva...
... ascomycete fungal laccase from
Thielavia arenaria – common structural features of
asco-laccases
Juha P. Kallio
1
, Chiara Gasparetti
2
, Martina Andberg
2
, Harry Boer
2
, Anu Koivula
2
, Kristiina Kruus
2
,
Juha ... observed for MaL, that may determine
the properties of these asco-laccases at high protein concentrations.
Database
Structural data are available in the Protein Data Bank d...
... importin -a
nuclear import pathway, provided that CLIC4 can undergo a conforma-
tional rearrangement that exposes the NLS in an extended conformation.
Database
Structural data are available in ... atoms) and r
j
is the standard deviation of B
factors. The normalized B factors have a zero mean and unit
variance. All atoms that satisfy B
z
‡ 4 are treated as outliers
and discarded. After...